CyberinfraV1, Main, Exploration, bibRecord, 000E91

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

Identifieur interne : 000E91 ( Main/Exploration ); précédent : 000E90; suivant : 000E92

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

Auteurs : Barry Smith [États-Unis] ; Michael Ashburner [Royaume-Uni] ; Cornelius Rosse [États-Unis] ; Jonathan Bard [Royaume-Uni] ; William Bug [États-Unis] ; Werner Ceusters [États-Unis] ; Louis J. Goldberg [États-Unis] ; Karen Eilbeck [États-Unis] ; Amelia Ireland [Royaume-Uni] ; Christopher J. Mungall [États-Unis] ; Neocles Leontis [États-Unis] ; Philippe Rocca-Serra [Royaume-Uni] ; Alan Ruttenberg [États-Unis] ; Susanna-Assunta Sansone [Royaume-Uni] ; Richard H. Scheuermann [États-Unis] ; Nigam Shah [États-Unis] ; Patricia L. Whetzel [États-Unis] ; Suzanna Lewis [États-Unis]

Source :

Nature biotechnology [ 1087-0156 ] ; 2007.

RBID : PMC:2814061

Abstract

The value of any kind of data is greatly enhanced when it exists in a form that allows it to be integrated with other data. One approach to integration is through the annotation of multiple bodies of data using common controlled vocabularies or ‘ontologies’. Unfortunately, the very success of this approach has led to a proliferation of ontologies, which itself creates obstacles to integration. The Open Biomedical Ontologies (OBO) consortium is pursuing a strategy to overcome this problem. Existing OBO ontologies, including the Gene Ontology, are undergoing coordinated reform, and new ontologies are being created on the basis of an evolving set of shared principles governing ontology development. The result is an expanding family of ontologies designed to be interoperable and logically well formed and to incorporate accurate representations of biological reality. We describe this OBO Foundry initiative and provide guidelines for those who might wish to become involved.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2814061

DOI: 10.1038/nbt1346
PubMed: 17989687
PubMed Central: 2814061

Affiliations:

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration</title>
<author><name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<affiliation wicri:level="4"><nlm:aff id="A1">Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ashburner, Michael" sort="Ashburner, Michael" uniqKey="Ashburner M" first="Michael" last="Ashburner">Michael Ashburner</name>
<affiliation wicri:level="4"><nlm:aff id="A2">Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH</wicri:regionArea>
<orgName type="university">Université de Cambridge</orgName>
<placeName><settlement type="city">Cambridge</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Angleterre de l'Est</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Rosse, Cornelius" sort="Rosse, Cornelius" uniqKey="Rosse C" first="Cornelius" last="Rosse">Cornelius Rosse</name>
<affiliation wicri:level="4"><nlm:aff id="A3">Department of Biological Structure, Box 357420, University of Washington, Seattle, Washington 98195, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Structure, Box 357420, University of Washington, Seattle, Washington 98195</wicri:regionArea>
<orgName type="university">Université de Washington</orgName>
<placeName><settlement type="city">Seattle</settlement>
<region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bard, Jonathan" sort="Bard, Jonathan" uniqKey="Bard J" first="Jonathan" last="Bard">Jonathan Bard</name>
<affiliation wicri:level="4"><nlm:aff id="A4">Department of Biomedical Sciences, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, Scotland, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Biomedical Sciences, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, Scotland</wicri:regionArea>
<orgName type="university">Université d'Édimbourg</orgName>
<placeName><settlement type="city">Édimbourg</settlement>
<region type="country">Écosse</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bug, William" sort="Bug, William" uniqKey="Bug W" first="William" last="Bug">William Bug</name>
<affiliation wicri:level="1"><nlm:aff id="A5">Department of Neurobiology and Anatomy, Drexel University College of Medicine, 2900 Queen Lane, Philadelphia, Pennsylvania 19129, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Neurobiology and Anatomy, Drexel University College of Medicine, 2900 Queen Lane, Philadelphia, Pennsylvania 19129</wicri:regionArea>
<wicri:noRegion>Pennsylvania 19129</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ceusters, Werner" sort="Ceusters, Werner" uniqKey="Ceusters W" first="Werner" last="Ceusters">Werner Ceusters</name>
<affiliation wicri:level="4"><nlm:aff id="A6">Department of Psychiatry and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Psychiatry and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Goldberg, Louis J" sort="Goldberg, Louis J" uniqKey="Goldberg L" first="Louis J" last="Goldberg">Louis J. Goldberg</name>
<affiliation wicri:level="4"><nlm:aff id="A7">Department of Oral Biology and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Oral Biology and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Eilbeck, Karen" sort="Eilbeck, Karen" uniqKey="Eilbeck K" first="Karen" last="Eilbeck">Karen Eilbeck</name>
<affiliation wicri:level="1"><nlm:aff id="A8">Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, Utah 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, Utah 84112</wicri:regionArea>
<wicri:noRegion>Utah 84112</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ireland, Amelia" sort="Ireland, Amelia" uniqKey="Ireland A" first="Amelia" last="Ireland">Amelia Ireland</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Mungall, Christopher J" sort="Mungall, Christopher J" uniqKey="Mungall C" first="Christopher J" last="Mungall">Christopher J. Mungall</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720</wicri:regionArea>
<wicri:noRegion>California 94720</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Leontis, Neocles" sort="Leontis, Neocles" uniqKey="Leontis N" first="Neocles" last="Leontis">Neocles Leontis</name>
<affiliation wicri:level="1"><nlm:aff id="A12">Department of Chemistry, Bowling Green State University, 212 Physical Sciences Laboratory Building, 1001 East Wooster Street, Bowling Green, Ohio 43403, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Chemistry, Bowling Green State University, 212 Physical Sciences Laboratory Building, 1001 East Wooster Street, Bowling Green, Ohio 43403</wicri:regionArea>
<wicri:noRegion>Ohio 43403</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ruttenberg, Alan" sort="Ruttenberg, Alan" uniqKey="Ruttenberg A" first="Alan" last="Ruttenberg">Alan Ruttenberg</name>
<affiliation wicri:level="1"><nlm:aff id="A13">Science Commons, c/o Massachusetts Institute of Technology Computer Science and Artificial Intelligence Laboratory, Building 32-386D, 32 Vassar Street, Cambridge, Massachusetts 02139, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Science Commons, c/o Massachusetts Institute of Technology Computer Science and Artificial Intelligence Laboratory, Building 32-386D, 32 Vassar Street, Cambridge, Massachusetts 02139</wicri:regionArea>
<wicri:noRegion>Massachusetts 02139</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Scheuermann, Richard H" sort="Scheuermann, Richard H" uniqKey="Scheuermann R" first="Richard H" last="Scheuermann">Richard H. Scheuermann</name>
<affiliation wicri:level="2"><nlm:aff id="A14">Department of Pathology, University of Texas Southwestern Medical Center, Harry Hines Blvd., Dallas, Texas 75390 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Texas</region>
</placeName>
<wicri:cityArea>Department of Pathology, University of Texas Southwestern Medical Center, Harry Hines Blvd., Dallas</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Shah, Nigam" sort="Shah, Nigam" uniqKey="Shah N" first="Nigam" last="Shah">Nigam Shah</name>
<affiliation wicri:level="1"><nlm:aff id="A15">Stanford Medical Informatics, Stanford University School of Medicine, 251 Campus Drive, Stanford, California 94305, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Stanford Medical Informatics, Stanford University School of Medicine, 251 Campus Drive, Stanford, California 94305</wicri:regionArea>
<wicri:noRegion>California 94305</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Whetzel, Patricia L" sort="Whetzel, Patricia L" uniqKey="Whetzel P" first="Patricia L" last="Whetzel">Patricia L. Whetzel</name>
<affiliation wicri:level="1"><nlm:aff id="A16">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, 423 Guardian Drive, Philadelphia, Pennsylvania 19104, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, 423 Guardian Drive, Philadelphia, Pennsylvania 19104</wicri:regionArea>
<wicri:noRegion>Pennsylvania 19104</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lewis, Suzanna" sort="Lewis, Suzanna" uniqKey="Lewis S" first="Suzanna" last="Lewis">Suzanna Lewis</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720</wicri:regionArea>
<wicri:noRegion>California 94720</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">17989687</idno>
<idno type="pmc">2814061</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2814061</idno>
<idno type="RBID">PMC:2814061</idno>
<idno type="doi">10.1038/nbt1346</idno>
<date when="2007">2007</date>
<idno type="wicri:Area/Pmc/Corpus">000304</idno>
<idno type="wicri:Area/Pmc/Curation">000304</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000688</idno>
<idno type="wicri:Area/Ncbi/Merge">000038</idno>
<idno type="wicri:Area/Ncbi/Curation">000038</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000038</idno>
<idno type="wicri:doubleKey">1087-0156:2007:Smith B:the:obo:foundry</idno>
<idno type="wicri:Area/Main/Merge">000E98</idno>
<idno type="wicri:Area/Main/Curation">000E91</idno>
<idno type="wicri:Area/Main/Exploration">000E91</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration</title>
<author><name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<affiliation wicri:level="4"><nlm:aff id="A1">Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Philosophy and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ashburner, Michael" sort="Ashburner, Michael" uniqKey="Ashburner M" first="Michael" last="Ashburner">Michael Ashburner</name>
<affiliation wicri:level="4"><nlm:aff id="A2">Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH</wicri:regionArea>
<orgName type="university">Université de Cambridge</orgName>
<placeName><settlement type="city">Cambridge</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Angleterre de l'Est</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Rosse, Cornelius" sort="Rosse, Cornelius" uniqKey="Rosse C" first="Cornelius" last="Rosse">Cornelius Rosse</name>
<affiliation wicri:level="4"><nlm:aff id="A3">Department of Biological Structure, Box 357420, University of Washington, Seattle, Washington 98195, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Biological Structure, Box 357420, University of Washington, Seattle, Washington 98195</wicri:regionArea>
<orgName type="university">Université de Washington</orgName>
<placeName><settlement type="city">Seattle</settlement>
<region type="state">Washington (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bard, Jonathan" sort="Bard, Jonathan" uniqKey="Bard J" first="Jonathan" last="Bard">Jonathan Bard</name>
<affiliation wicri:level="4"><nlm:aff id="A4">Department of Biomedical Sciences, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, Scotland, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>Department of Biomedical Sciences, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, Scotland</wicri:regionArea>
<orgName type="university">Université d'Édimbourg</orgName>
<placeName><settlement type="city">Édimbourg</settlement>
<region type="country">Écosse</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Bug, William" sort="Bug, William" uniqKey="Bug W" first="William" last="Bug">William Bug</name>
<affiliation wicri:level="1"><nlm:aff id="A5">Department of Neurobiology and Anatomy, Drexel University College of Medicine, 2900 Queen Lane, Philadelphia, Pennsylvania 19129, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Neurobiology and Anatomy, Drexel University College of Medicine, 2900 Queen Lane, Philadelphia, Pennsylvania 19129</wicri:regionArea>
<wicri:noRegion>Pennsylvania 19129</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ceusters, Werner" sort="Ceusters, Werner" uniqKey="Ceusters W" first="Werner" last="Ceusters">Werner Ceusters</name>
<affiliation wicri:level="4"><nlm:aff id="A6">Department of Psychiatry and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Psychiatry and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Goldberg, Louis J" sort="Goldberg, Louis J" uniqKey="Goldberg L" first="Louis J" last="Goldberg">Louis J. Goldberg</name>
<affiliation wicri:level="4"><nlm:aff id="A7">Department of Oral Biology and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Oral Biology and New York State Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo, 701 Ellicott Street, Buffalo, New York 14203</wicri:regionArea>
<orgName type="university">Université d'État de New York à Buffalo</orgName>
<placeName><settlement type="city">Buffalo (New York)</settlement>
<region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Eilbeck, Karen" sort="Eilbeck, Karen" uniqKey="Eilbeck K" first="Karen" last="Eilbeck">Karen Eilbeck</name>
<affiliation wicri:level="1"><nlm:aff id="A8">Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, Utah 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Eccles Institute of Human Genetics, University of Utah, 15 North 2030 East, Salt Lake City, Utah 84112</wicri:regionArea>
<wicri:noRegion>Utah 84112</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ireland, Amelia" sort="Ireland, Amelia" uniqKey="Ireland A" first="Amelia" last="Ireland">Amelia Ireland</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Mungall, Christopher J" sort="Mungall, Christopher J" uniqKey="Mungall C" first="Christopher J" last="Mungall">Christopher J. Mungall</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720</wicri:regionArea>
<wicri:noRegion>California 94720</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Leontis, Neocles" sort="Leontis, Neocles" uniqKey="Leontis N" first="Neocles" last="Leontis">Neocles Leontis</name>
<affiliation wicri:level="1"><nlm:aff id="A12">Department of Chemistry, Bowling Green State University, 212 Physical Sciences Laboratory Building, 1001 East Wooster Street, Bowling Green, Ohio 43403, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Chemistry, Bowling Green State University, 212 Physical Sciences Laboratory Building, 1001 East Wooster Street, Bowling Green, Ohio 43403</wicri:regionArea>
<wicri:noRegion>Ohio 43403</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Ruttenberg, Alan" sort="Ruttenberg, Alan" uniqKey="Ruttenberg A" first="Alan" last="Ruttenberg">Alan Ruttenberg</name>
<affiliation wicri:level="1"><nlm:aff id="A13">Science Commons, c/o Massachusetts Institute of Technology Computer Science and Artificial Intelligence Laboratory, Building 32-386D, 32 Vassar Street, Cambridge, Massachusetts 02139, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Science Commons, c/o Massachusetts Institute of Technology Computer Science and Artificial Intelligence Laboratory, Building 32-386D, 32 Vassar Street, Cambridge, Massachusetts 02139</wicri:regionArea>
<wicri:noRegion>Massachusetts 02139</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<affiliation wicri:level="1"><nlm:aff id="A9">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD</wicri:regionArea>
<wicri:noRegion>CB10 1SD</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Scheuermann, Richard H" sort="Scheuermann, Richard H" uniqKey="Scheuermann R" first="Richard H" last="Scheuermann">Richard H. Scheuermann</name>
<affiliation wicri:level="2"><nlm:aff id="A14">Department of Pathology, University of Texas Southwestern Medical Center, Harry Hines Blvd., Dallas, Texas 75390 USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName><region type="state">Texas</region>
</placeName>
<wicri:cityArea>Department of Pathology, University of Texas Southwestern Medical Center, Harry Hines Blvd., Dallas</wicri:cityArea>
</affiliation>
</author>
<author><name sortKey="Shah, Nigam" sort="Shah, Nigam" uniqKey="Shah N" first="Nigam" last="Shah">Nigam Shah</name>
<affiliation wicri:level="1"><nlm:aff id="A15">Stanford Medical Informatics, Stanford University School of Medicine, 251 Campus Drive, Stanford, California 94305, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Stanford Medical Informatics, Stanford University School of Medicine, 251 Campus Drive, Stanford, California 94305</wicri:regionArea>
<wicri:noRegion>California 94305</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Whetzel, Patricia L" sort="Whetzel, Patricia L" uniqKey="Whetzel P" first="Patricia L" last="Whetzel">Patricia L. Whetzel</name>
<affiliation wicri:level="1"><nlm:aff id="A16">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, 423 Guardian Drive, Philadelphia, Pennsylvania 19104, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, 423 Guardian Drive, Philadelphia, Pennsylvania 19104</wicri:regionArea>
<wicri:noRegion>Pennsylvania 19104</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lewis, Suzanna" sort="Lewis, Suzanna" uniqKey="Lewis S" first="Suzanna" last="Lewis">Suzanna Lewis</name>
<affiliation wicri:level="1"><nlm:aff id="A10">Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Life Sciences Division, Lawrence Berkeley National Lab, 1 Cyclotron Road, Berkeley, California 94720</wicri:regionArea>
<wicri:noRegion>California 94720</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Nature biotechnology</title>
<idno type="ISSN">1087-0156</idno>
<idno type="eISSN">1546-1696</idno>
<imprint><date when="2007">2007</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p id="P1">The value of any kind of data is greatly enhanced when it exists in a form that allows it to be integrated with other data. One approach to integration is through the annotation of multiple bodies of data using common controlled vocabularies or ‘ontologies’. Unfortunately, the very success of this approach has led to a proliferation of ontologies, which itself creates obstacles to integration. The Open Biomedical Ontologies (OBO) consortium is pursuing a strategy to overcome this problem. Existing OBO ontologies, including the Gene Ontology, are undergoing coordinated reform, and new ontologies are being created on the basis of an evolving set of shared principles governing ontology development. The result is an expanding family of ontologies designed to be interoperable and logically well formed and to incorporate accurate representations of biological reality. We describe this OBO Foundry initiative and provide guidelines for those who might wish to become involved.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>Royaume-Uni</li>
<li>États-Unis</li>
</country>
<region><li>Angleterre</li>
<li>Angleterre de l'Est</li>
<li>Texas</li>
<li>Washington (État)</li>
<li>Écosse</li>
<li>État de New York</li>
</region>
<settlement><li>Buffalo (New York)</li>
<li>Cambridge</li>
<li>Seattle</li>
<li>Édimbourg</li>
</settlement>
<orgName><li>Université d'Édimbourg</li>
<li>Université d'État de New York à Buffalo</li>
<li>Université de Cambridge</li>
<li>Université de Washington</li>
</orgName>
</list>
<tree><country name="États-Unis"><region name="État de New York"><name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
</region>
<name sortKey="Bug, William" sort="Bug, William" uniqKey="Bug W" first="William" last="Bug">William Bug</name>
<name sortKey="Ceusters, Werner" sort="Ceusters, Werner" uniqKey="Ceusters W" first="Werner" last="Ceusters">Werner Ceusters</name>
<name sortKey="Eilbeck, Karen" sort="Eilbeck, Karen" uniqKey="Eilbeck K" first="Karen" last="Eilbeck">Karen Eilbeck</name>
<name sortKey="Goldberg, Louis J" sort="Goldberg, Louis J" uniqKey="Goldberg L" first="Louis J" last="Goldberg">Louis J. Goldberg</name>
<name sortKey="Leontis, Neocles" sort="Leontis, Neocles" uniqKey="Leontis N" first="Neocles" last="Leontis">Neocles Leontis</name>
<name sortKey="Lewis, Suzanna" sort="Lewis, Suzanna" uniqKey="Lewis S" first="Suzanna" last="Lewis">Suzanna Lewis</name>
<name sortKey="Mungall, Christopher J" sort="Mungall, Christopher J" uniqKey="Mungall C" first="Christopher J" last="Mungall">Christopher J. Mungall</name>
<name sortKey="Rosse, Cornelius" sort="Rosse, Cornelius" uniqKey="Rosse C" first="Cornelius" last="Rosse">Cornelius Rosse</name>
<name sortKey="Ruttenberg, Alan" sort="Ruttenberg, Alan" uniqKey="Ruttenberg A" first="Alan" last="Ruttenberg">Alan Ruttenberg</name>
<name sortKey="Scheuermann, Richard H" sort="Scheuermann, Richard H" uniqKey="Scheuermann R" first="Richard H" last="Scheuermann">Richard H. Scheuermann</name>
<name sortKey="Shah, Nigam" sort="Shah, Nigam" uniqKey="Shah N" first="Nigam" last="Shah">Nigam Shah</name>
<name sortKey="Whetzel, Patricia L" sort="Whetzel, Patricia L" uniqKey="Whetzel P" first="Patricia L" last="Whetzel">Patricia L. Whetzel</name>
</country>
<country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Ashburner, Michael" sort="Ashburner, Michael" uniqKey="Ashburner M" first="Michael" last="Ashburner">Michael Ashburner</name>
</region>
<name sortKey="Bard, Jonathan" sort="Bard, Jonathan" uniqKey="Bard J" first="Jonathan" last="Bard">Jonathan Bard</name>
<name sortKey="Ireland, Amelia" sort="Ireland, Amelia" uniqKey="Ireland A" first="Amelia" last="Ireland">Amelia Ireland</name>
<name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/Main/Exploration

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000E91 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000E91 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:2814061
   |texte=   The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:17989687" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024

Serveur d'exploration Cyberinfrastructure

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

Source :

Abstract

Links toward previous steps (curation, corpus...)

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration Cyberinfrastructure
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.